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stomics mouse brain datasets  (Complete Genomics Inc)


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    Complete Genomics Inc stomics mouse brain datasets
    a-d) Detection density per bin/spot plot for Visium dorsolateral prefrontal cortex (DLPFC), Xenium <t>mouse</t> <t>brain,</t> <t>STOmics</t> mouse brain and CosMx non-small cell lung cancer (NSCLC), reveal tissue structure. e-h) Regions annotated for each bin/spot using the Allen Brain Atlas for the mouse brain and manual annotation based on immunofluorescence markers of CosMx NSCLC. i-l) Number of cells plot against the total detections/library sizes per bin/spot, coloured by the tissue region, showing the region-specific relationship between cells and detections/counts. m-p) Average detections/library sizes per cell for each region, computed as the sum of detections divided by the number of cells for each region, showing that related regions exhibit similar total detections/library sizes per cell.
    Stomics Mouse Brain Datasets, supplied by Complete Genomics Inc, used in various techniques. Bioz Stars score: 97/100, based on 363 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/stomics mouse brain datasets/product/Complete Genomics Inc
    Average 97 stars, based on 363 article reviews
    stomics mouse brain datasets - by Bioz Stars, 2026-05
    97/100 stars

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    1) Product Images from "Library size confounds biology in spatial transcriptomics data"

    Article Title: Library size confounds biology in spatial transcriptomics data

    Journal: bioRxiv

    doi: 10.1101/2023.03.15.532733

    a-d) Detection density per bin/spot plot for Visium dorsolateral prefrontal cortex (DLPFC), Xenium mouse brain, STOmics mouse brain and CosMx non-small cell lung cancer (NSCLC), reveal tissue structure. e-h) Regions annotated for each bin/spot using the Allen Brain Atlas for the mouse brain and manual annotation based on immunofluorescence markers of CosMx NSCLC. i-l) Number of cells plot against the total detections/library sizes per bin/spot, coloured by the tissue region, showing the region-specific relationship between cells and detections/counts. m-p) Average detections/library sizes per cell for each region, computed as the sum of detections divided by the number of cells for each region, showing that related regions exhibit similar total detections/library sizes per cell.
    Figure Legend Snippet: a-d) Detection density per bin/spot plot for Visium dorsolateral prefrontal cortex (DLPFC), Xenium mouse brain, STOmics mouse brain and CosMx non-small cell lung cancer (NSCLC), reveal tissue structure. e-h) Regions annotated for each bin/spot using the Allen Brain Atlas for the mouse brain and manual annotation based on immunofluorescence markers of CosMx NSCLC. i-l) Number of cells plot against the total detections/library sizes per bin/spot, coloured by the tissue region, showing the region-specific relationship between cells and detections/counts. m-p) Average detections/library sizes per cell for each region, computed as the sum of detections divided by the number of cells for each region, showing that related regions exhibit similar total detections/library sizes per cell.

    Techniques Used: Immunofluorescence



    Similar Products

    stomics mouse brain datasets  (Complete Genomics Inc)
    97
    Complete Genomics Inc stomics mouse brain datasets
    a-d) Detection density per bin/spot plot for Visium dorsolateral prefrontal cortex (DLPFC), Xenium <t>mouse</t> <t>brain,</t> <t>STOmics</t> mouse brain and CosMx non-small cell lung cancer (NSCLC), reveal tissue structure. e-h) Regions annotated for each bin/spot using the Allen Brain Atlas for the mouse brain and manual annotation based on immunofluorescence markers of CosMx NSCLC. i-l) Number of cells plot against the total detections/library sizes per bin/spot, coloured by the tissue region, showing the region-specific relationship between cells and detections/counts. m-p) Average detections/library sizes per cell for each region, computed as the sum of detections divided by the number of cells for each region, showing that related regions exhibit similar total detections/library sizes per cell.
    Stomics Mouse Brain Datasets, supplied by Complete Genomics Inc, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/stomics mouse brain datasets/product/Complete Genomics Inc
    Average 97 stars, based on 1 article reviews
    stomics mouse brain datasets - by Bioz Stars, 2026-05
    97/100 stars
    		  Buy from Supplier

    Image Search Results


    a-d) Detection density per bin/spot plot for Visium dorsolateral prefrontal cortex (DLPFC), Xenium mouse brain, STOmics mouse brain and CosMx non-small cell lung cancer (NSCLC), reveal tissue structure. e-h) Regions annotated for each bin/spot using the Allen Brain Atlas for the mouse brain and manual annotation based on immunofluorescence markers of CosMx NSCLC. i-l) Number of cells plot against the total detections/library sizes per bin/spot, coloured by the tissue region, showing the region-specific relationship between cells and detections/counts. m-p) Average detections/library sizes per cell for each region, computed as the sum of detections divided by the number of cells for each region, showing that related regions exhibit similar total detections/library sizes per cell.

    Journal: bioRxiv

    Article Title: Library size confounds biology in spatial transcriptomics data

    doi: 10.1101/2023.03.15.532733

    Figure Lengend Snippet: a-d) Detection density per bin/spot plot for Visium dorsolateral prefrontal cortex (DLPFC), Xenium mouse brain, STOmics mouse brain and CosMx non-small cell lung cancer (NSCLC), reveal tissue structure. e-h) Regions annotated for each bin/spot using the Allen Brain Atlas for the mouse brain and manual annotation based on immunofluorescence markers of CosMx NSCLC. i-l) Number of cells plot against the total detections/library sizes per bin/spot, coloured by the tissue region, showing the region-specific relationship between cells and detections/counts. m-p) Average detections/library sizes per cell for each region, computed as the sum of detections divided by the number of cells for each region, showing that related regions exhibit similar total detections/library sizes per cell.

    Article Snippet: With the Visium brain dataset , we could clearly identify the layering of the cortex ( ) while with the Xenium and STOmics mouse brain datasets , we could visually identify the cortex (darker greens in ), white matter (pinks in ) and hippocampus (brighter greens in ).

    Techniques: Immunofluorescence